Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs3794806 chr17:28586903 T/G 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs379685 chr17:39334825 T/A 0.000153 111 0 20.25 13.15 KM Plot
LAML rs3798850 chr6:127613966 C/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs3798852 chr6:127636733 A/G 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs3798853 chr6:127636823 C/T 1.86E-5 111 15.17 16.27 0.98 KM Plot
LAML rs3798857 chr6:127659473 A/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs3806694 chr3:48672334 G/C 0.000106 111 15.73 11.68 0 KM Plot
LAML rs3810353 chr19:55691600 C/G 7.41E-6 109 18.23 7.13 1.02 KM Plot
LAML rs3821095 chr2:172684006 A/G 0.000164 111 5.57 16.27 16.3 KM Plot
LAML rs3821876 chr3:48668394 G/T 0.000106 111 15.73 11.68 0 KM Plot
LAML rs3823575 chr7:135662281 A/C 7.36E-5 111 13.15 28.93 0 KM Plot
LAML rs3825661 chr14:90767607 C/T 2.75E-5 108 1.03 22.37 12.7 KM Plot
LAML rs3826832 chr19:48247639 G/A 7.49E-7 108 5.1 22.37 14.18 KM Plot
LAML rs3828047 chr1:887801 A/G 0.000158 111 0 15.67 14.22 KM Plot
LAML rs3828049 chr1:889238 G/A 0.000172 110 14.22 16.17 0 KM Plot